Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Mnod_4388PFAM: extracellular solute-binding protein family 3; KEGG: met:M446_2737 arogenate dehydratase. (246 aa)    
Predicted Functional Partners:
Mnod_5818
PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: met:M446_5258 prephenate dehydrogenase.
    
 0.909
Mnod_0511
PFAM: prephenate dehydratase; KEGG: met:M446_1620 prephenate dehydratase.
     
 0.905
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: met:M446_5257 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.903
Mnod_0890
PFAM: aminotransferase class I and II; KEGG: bpt:Bpet4447 aspartate aminotransferase.
     
  0.900
Mnod_1959
PFAM: aminotransferase class I and II; KEGG: met:M446_3821 aminotransferase class I and II.
     
  0.900
Mnod_1238
PFAM: Pyridoxal-dependent decarboxylase; KEGG: met:M446_1957 aromatic-L-amino-acid decarboxylase.
     
 0.804
Mnod_3671
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_1744 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.774
Mnod_3672
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_1743 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.772
Mnod_0893
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet4444 amino acids ABC transporter, permease protein.
 
 
 0.749
Mnod_3974
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0817 ABC transporter permease protein.
 
 
 0.731
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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