Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4393PFAM: protein of unknown function DUF1499; KEGG: met:M446_2732 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Mnod_0182
PFAM: transcription activator effector binding; KEGG: met:M446_3657 transcription activator effector binding.
  
     0.694
Mnod_1500
KEGG: met:M446_0679 hypothetical protein.
  
     0.685
Mnod_1641
KEGG: met:M446_0456 hypothetical protein.
  
     0.681
Mnod_6363
PFAM: AsmA family protein; KEGG: met:M446_5855 AsmA family protein.
 
     0.664
Mnod_1624
Porin; KEGG: met:M446_4335 porin.
  
     0.659
Mnod_1173
PFAM: lipolytic protein G-D-S-L family; protein of unknown function DUF459; KEGG: met:M446_1808 hypothetical protein.
  
     0.658
Mnod_2142
Porin; KEGG: met:M446_2428 porin.
  
     0.651
Mnod_3321
Porin; KEGG: met:M446_4335 porin.
  
     0.637
Mnod_5256
Porin; KEGG: met:M446_3292 porin.
  
     0.636
Mnod_2044
Porin; PFAM: porin; KEGG: met:M446_4335 porin.
  
     0.629
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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