Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4402KEGG: met:M446_2722 hypothetical protein. (64 aa)    
Predicted Functional Partners:
Mnod_1493
PFAM: protein of unknown function DUF892; KEGG: met:M446_0688 hypothetical protein.
 
  
 0.816
Mnod_2220
PFAM: protein of unknown function DUF892; KEGG: mex:Mext_3614 hypothetical protein.
  
  
 0.783
Mnod_4845
PFAM: protein of unknown function DUF892; KEGG: met:M446_6464 hypothetical protein.
  
  
 0.783
Mnod_5257
PFAM: protein of unknown function DUF892; KEGG: met:M446_3294 hypothetical protein.
  
  
 0.783
Mnod_1165
PFAM: OsmC family protein; KEGG: mex:Mext_4270 OsmC family protein.
  
  
 0.584
Mnod_3728
KEGG: met:M446_4659 hypothetical protein.
  
  
 0.556
Mnod_7395
KEGG: met:M446_6652 hypothetical protein.
  
  
 0.544
Mnod_0676
KEGG: met:M446_1766 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.538
Mnod_5876
PFAM: glycosyl transferase family 8; KEGG: rsh:Rsph17029_3683 glycosyl transferase family protein.
   
  
 0.524
Mnod_1668
PFAM: CsbD family protein; KEGG: met:M446_0717 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.521
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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