Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_4404KEGG: met:M446_2720 contains weak similarity to ABC transporter ATP-binding protein. (943 aa)    
Predicted Functional Partners:
Mnod_4405
PFAM: cyclic nucleotide-binding; KEGG: met:M446_2719 cyclic nucleotide-binding protein.
 
 0.889
Mnod_7224
PFAM: glycosyl transferase group 1; KEGG: met:M446_6472 glycosyl transferase group 1.
 
   0.788
Mnod_7223
PFAM: glycosyl transferase group 1; KEGG: met:M446_6471 glycosyl transferase group 1.
 
   0.787
Mnod_7222
KEGG: met:M446_6470 RedA-like protein.
 
     0.782
Mnod_7228
PFAM: extracellular solute-binding protein family 5; KEGG: met:M446_6476 extracellular solute-binding protein.
 
   
 0.781
Mnod_7225
PFAM: Glycosyltransferase 28 domain; KEGG: met:M446_6473 glycosyltransferase family 28 protein.
 
     0.780
Mnod_0315
PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: met:M446_2293 adenylate/guanylate cyclase.
 
 
 0.774
Mnod_7229
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_6477 binding-protein-dependent transport systems inner membrane component.
  
   
 0.761
Mnod_7519
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: met:M446_6772 adenylate/guanylate cyclase.
  
   0.759
Mnod_3196
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sil:SPO0751 adenylate/guanylate cyclase.
  
   0.755
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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