STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4427PFAM: UspA domain protein; KEGG: met:M446_3395 UspA domain-containing protein. (167 aa)    
Predicted Functional Partners:
Mnod_5288
PFAM: protein of unknown function DUF81; KEGG: met:M446_3097 hypothetical protein.
 
   
 0.818
Mnod_5287
KEGG: met:M446_3096 hypothetical protein.
 
     0.815
Mnod_1375
PFAM: protein of unknown function DUF526; KEGG: met:M446_0853 hypothetical protein.
  
     0.647
Mnod_7066
PFAM: protein of unknown function DUF1476; KEGG: met:M446_6239 hypothetical protein.
  
     0.587
Mnod_0693
KEGG: met:M446_1097 hypothetical protein.
  
     0.534
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.489
Mnod_0998
PFAM: import inner membrane translocase subunit Tim44; KEGG: met:M446_1374 import inner membrane translocase subunit Tim44.
  
     0.468
Mnod_4791
PFAM: conserved hypothetical protein; KEGG: met:M446_2637 hypothetical protein; Belongs to the UPF0262 family.
  
     0.468
Mnod_4958
PFAM: conserved hypothetical protein; KEGG: met:M446_4930 hypothetical protein.
  
     0.466
Mnod_1742
KEGG: met:M446_5432 hypothetical protein.
  
     0.448
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.