Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4439KEGG: met:M446_3254 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Mnod_0171
PFAM: protein of unknown function DUF1236; KEGG: met:M446_4588 hypothetical protein.
 
     0.702
Mnod_1641
KEGG: met:M446_0456 hypothetical protein.
  
     0.684
Mnod_0713
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: met:M446_1122 peptidoglycan binding domain-containing protein.
  
     0.626
Mnod_1500
KEGG: met:M446_0679 hypothetical protein.
  
    0.624
Mnod_1049
PFAM: cyclic nucleotide-binding; KEGG: met:M446_1668 cyclic nucleotide-binding protein.
  
     0.614
Mnod_0182
PFAM: transcription activator effector binding; KEGG: met:M446_3657 transcription activator effector binding.
  
     0.600
Mnod_7582
KEGG: met:M446_6846 hypothetical protein.
 
 
 0.589
Mnod_4512
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: met:M446_4578 AMP-dependent synthetase and ligase.
  
   
 0.552
Mnod_1069
KEGG: met:M446_2101 hypothetical protein.
  
     0.538
Mnod_4551
KEGG: met:M446_3065 porin opacity type.
  
     0.531
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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