STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4472PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: met:M446_4538 ethyl tert-butyl ether degradation EthD. (105 aa)    
Predicted Functional Partners:
Mnod_4471
KEGG: met:M446_4537 hypothetical protein.
       0.851
Mnod_3244
KEGG: hypothetical protein.
  
     0.735
Mnod_4473
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: met:M446_4539 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.609
Mnod_2055
KEGG: hypothetical protein.
  
     0.575
Mnod_2264
KEGG: met:M446_5598 hypothetical protein.
  
     0.539
Mnod_1148
PFAM: OsmC family protein; KEGG: met:M446_2189 OsmC family protein.
  
     0.531
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
  
     0.405
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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