STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4483KEGG: met:M446_4551 putative transmembrane anti-sigma factor. (259 aa)    
Predicted Functional Partners:
Mnod_4484
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: met:M446_4552 ECF subfamily RNA polymerase sigma-24 factor.
 
 
 0.929
Mnod_4482
PFAM: protein of unknown function UPF0005; KEGG: met:M446_4550 hypothetical protein; Belongs to the BI1 family.
 
     0.693
Mnod_5303
KEGG: met:M446_3110 hypothetical protein.
  
     0.653
Mnod_3738
KEGG: mpo:Mpop_1315 hypothetical protein.
  
     0.610
Mnod_4485
TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: met:M446_4553 gamma-glutamyltransferase.
       0.605
Mnod_3740
Cellulose synthase subunit B; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
     0.599
Mnod_3372
Conserved hypothetical protein; KEGG: mpo:Mpop_3604 pyridine nucleotide-disulfide oxidoreductase family.
  
     0.598
Mnod_3704
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: met:M446_5939 ECF subfamily RNA polymerase sigma-24 factor.
 
 
 0.566
Mnod_6736
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; KEGG: nwi:Nwi_2138 RNA polymerase sigma factor SigJ.
 
 
 0.550
Mnod_2753
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mrd:Mrad2831_5260 ECF subfamily RNA polymerase sigma-24 factor.
 
 
 0.510
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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