STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4492PFAM: regulatory protein MarR; KEGG: met:M446_4560 MarR family transcriptional regulator. (193 aa)    
Predicted Functional Partners:
Mnod_7241
KEGG: met:M446_6043 outer membrane lipoprotein omp19.
  
     0.664
Mnod_1479
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.650
Mnod_1311
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.640
Mnod_6604
KEGG: met:M446_6067 hypothetical protein.
  
     0.637
Mnod_0705
KEGG: met:M446_2059 hypothetical protein.
  
     0.584
Mnod_4668
KEGG: met:M446_4778 hypothetical protein.
  
     0.568
Mnod_7568
KEGG: met:M446_6832 hypothetical protein.
  
     0.537
Mnod_4493
PFAM: Creatininase; KEGG: met:M446_4561 creatininase.
       0.536
Mnod_1090
KEGG: met:M446_2118 hypothetical protein.
  
     0.530
Mnod_7582
KEGG: met:M446_6846 hypothetical protein.
  
 
   0.500
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.