STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4494PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: met:M446_4562 cobalamin synthesis protein P47K. (320 aa)    
Predicted Functional Partners:
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.722
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.696
Mnod_4493
PFAM: Creatininase; KEGG: met:M446_4561 creatininase.
       0.644
Mnod_1390
SMART: WD-40 repeat protein; KEGG: met:M446_0862 WD-40 repeat-containing protein.
 
     0.615
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.570
rpmB
PFAM: ribosomal protein L28; KEGG: met:M446_3667 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.522
Mnod_2898
PFAM: periplasmic solute binding protein; KEGG: met:M446_2656 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.493
Mnod_5737
PFAM: periplasmic solute binding protein; KEGG: rru:Rru_A3704 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.493
Mnod_4495
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mrd:Mrad2831_0289 adenylate/guanylate cyclase.
       0.487
rpmG
PFAM: ribosomal protein L33; KEGG: met:M446_6677 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.469
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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