STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4496KEGG: met:M446_4563 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Mnod_0107
KEGG: met:M446_4743 TRAP-type uncharacterized transport system periplasmic component-like protein.
  
     0.727
Mnod_1792
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2023 peptidase A24A prepilin type IV.
   
  
 0.703
Mnod_0519
KEGG: met:M446_2036 TRAP-type uncharacterized transport system periplasmic component-like protein.
  
     0.684
Mnod_1793
PFAM: type II secretion system protein; KEGG: met:M446_2022 type II secretion system protein.
  
  
 0.671
Mnod_3667
SMART: metal-dependent phosphohydrolase HD region; KEGG: met:M446_0310 metal-dependent phosphohydrolase HD region.
  
     0.649
Mnod_1787
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: met:M446_2028 type II secretion system protein E.
  
  
 0.648
Mnod_1108
KEGG: met:M446_2137 hypothetical protein.
 
     0.639
Mnod_0156
KEGG: met:M446_4603 hypothetical protein.
 
     0.633
Mnod_3737
KEGG: mpo:Mpop_1316 hypothetical protein.
 
     0.615
Mnod_1897
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: met:M446_0364 radical SAM domain-containing protein.
  
     0.606
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.