Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4509PFAM: ribonuclease BN; KEGG: met:M446_4573 ribonuclease BN. (293 aa)    
Predicted Functional Partners:
Mnod_4510
PFAM: protein of unknown function DUF6 transmembrane; KEGG: met:M446_4574 hypothetical protein.
  
  
 0.675
Mnod_4739
PFAM: protein of unknown function DUF1150; KEGG: met:M446_4229 hypothetical protein.
  
     0.667
Mnod_7582
KEGG: met:M446_6846 hypothetical protein.
  
   
 0.629
Mnod_1311
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.594
Mnod_1479
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.590
Mnod_0955
PFAM: NUDIX hydrolase; KEGG: met:M446_1441 NUDIX hydrolase.
 
     0.579
Mnod_0713
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: met:M446_1122 peptidoglycan binding domain-containing protein.
 
     0.569
Mnod_4722
KEGG: met:M446_4209 hypothetical protein.
  
     0.543
Mnod_7208
KEGG: met:M446_6292 hypothetical protein.
  
     0.528
Mnod_7568
KEGG: met:M446_6832 hypothetical protein.
  
     0.516
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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