Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4533KEGG: met:M446_3260 hypothetical protein. (115 aa)    
Predicted Functional Partners:
Mnod_4534
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: met:M446_3259 MATE efflux family protein.
       0.853
Mnod_4739
PFAM: protein of unknown function DUF1150; KEGG: met:M446_4229 hypothetical protein.
  
     0.772
Mnod_7208
KEGG: met:M446_6292 hypothetical protein.
  
     0.769
Mnod_7506
KEGG: met:M446_6759 hypothetical protein.
  
     0.764
Mnod_4517
KEGG: met:M446_3666 hypothetical protein.
  
     0.762
Mnod_1064
PFAM: conserved hypothetical protein; KEGG: met:M446_2096 hypothetical protein.
  
     0.757
Mnod_5963
PFAM: protein of unknown function DUF1036; KEGG: met:M446_5206 hypothetical protein.
  
     0.756
Mnod_4557
PFAM: SCP-like extracellular; KEGG: met:M446_3058 SCP-like extracellular.
 
     0.750
Mnod_5203
Phasin; TIGRFAM: phasin; PFAM: Phasin 2 family protein; KEGG: met:M446_2947 phasin.
  
     0.750
Mnod_2142
Porin; KEGG: met:M446_2428 porin.
  
     0.749
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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