Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_4556PFAM: MscS Mechanosensitive ion channel; KEGG: met:M446_3059 MscS mechanosensitive ion channel. (883 aa)    
Predicted Functional Partners:
Mnod_4557
PFAM: SCP-like extracellular; KEGG: met:M446_3058 SCP-like extracellular.
       0.853
Mnod_0446
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: met:M446_2065 multiple antibiotic resistance (MarC)-related protein.
  
    0.648
Mnod_5461
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: met:M446_0254 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.494
Mnod_7264
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: met:M446_6023 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.494
Mnod_2044
Porin; PFAM: porin; KEGG: met:M446_4335 porin.
  
     0.456
Mnod_1624
Porin; KEGG: met:M446_4335 porin.
  
     0.431
Mnod_5301
PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: met:M446_3108 hypothetical protein.
      
 0.427
Mnod_5256
Porin; KEGG: met:M446_3292 porin.
  
     0.415
Mnod_3321
Porin; KEGG: met:M446_4335 porin.
  
     0.405
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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