Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_4557PFAM: SCP-like extracellular; KEGG: met:M446_3058 SCP-like extracellular. (169 aa)    
Predicted Functional Partners:
Mnod_4556
PFAM: MscS Mechanosensitive ion channel; KEGG: met:M446_3059 MscS mechanosensitive ion channel.
       0.853
Mnod_2326
Phasin; KEGG: met:M446_5741 phasin.
  
     0.767
Mnod_5203
Phasin; TIGRFAM: phasin; PFAM: Phasin 2 family protein; KEGG: met:M446_2947 phasin.
  
     0.763
Mnod_6390
Phasin; KEGG: met:M446_5741 phasin.
  
     0.763
Mnod_5937
Phasin; TIGRFAM: phasin; KEGG: met:M446_5238 phasin.
  
     0.756
Mnod_4533
KEGG: met:M446_3260 hypothetical protein.
 
     0.750
Mnod_4668
KEGG: met:M446_4778 hypothetical protein.
  
     0.730
Mnod_0685
KEGG: met:M446_1756 hypothetical protein.
  
     0.728
Mnod_1479
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.722
Mnod_1311
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.721
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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