STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4564KEGG: met:M446_3051 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Mnod_4563
KEGG: met:M446_3052 hypothetical protein.
       0.722
Mnod_6910
KEGG: met:M446_1567 hypothetical protein.
 
     0.625
Mnod_0182
PFAM: transcription activator effector binding; KEGG: met:M446_3657 transcription activator effector binding.
  
     0.613
Mnod_4565
KEGG: met:M446_3050 hypothetical protein.
       0.563
Mnod_4424
PFAM: GtrA family protein; KEGG: met:M446_3397 GtrA family protein.
 
     0.561
Mnod_0676
KEGG: met:M446_1766 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.526
Mnod_1462
PFAM: acyltransferase 3; KEGG: rme:Rmet_2746 acyltransferase 3.
  
     0.518
Mnod_1188
KEGG: met:M446_1823 hypothetical protein.
  
     0.481
Mnod_0728
PFAM: Chorismate mutase; KEGG: met:M446_1107 chorismate mutase.
 
   
 0.464
Mnod_1480
PFAM: OmpA/MotB domain protein; KEGG: met:M446_0701 hypothetical protein.
  
     0.446
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.