Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4580PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: met:M446_3035 methyltransferase type 12. (242 aa)    
Predicted Functional Partners:
Mnod_4579
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: met:M446_3036 amine oxidase.
 
     0.716
Mnod_4581
KEGG: met:M446_3034 hypothetical protein.
       0.563
Mnod_0182
PFAM: transcription activator effector binding; KEGG: met:M446_3657 transcription activator effector binding.
  
   
 0.553
Mnod_3161
KEGG: met:M446_3912 hypothetical protein.
 
     0.548
Mnod_3609
KEGG: met:M446_3960 hypothetical protein.
  
     0.478
Mnod_5927
PFAM: protein of unknown function DUF1236; KEGG: met:M446_5270 hypothetical protein.
  
     0.478
Mnod_5347
KEGG: met:M446_5040 hypothetical protein.
  
     0.474
Mnod_0531
PFAM: extracellular solute-binding protein family 1; KEGG: mrd:Mrad2831_2892 extracellular solute-binding protein.
 
     0.463
Mnod_1413
PFAM: extracellular solute-binding protein family 1; KEGG: met:M446_0822 extracellular solute-binding protein.
 
     0.455
Mnod_2705
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mrd:Mrad2831_0112 hypothetical protein.
  
     0.448
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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