STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4591TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_4798 3-hydroxybutyrate dehydrogenase. (261 aa)    
Predicted Functional Partners:
Mnod_4592
PFAM: Acetoacetate decarboxylase; KEGG: bid:Bind_1938 acetoacetate decarboxylase.
    
  0.966
Mnod_6365
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: met:M446_5857 3-oxoacid CoA-transferase, B subunit.
 
 0.921
Mnod_2776
PFAM: pyruvate carboxyltransferase; KEGG: met:M446_1922 hydroxymethylglutaryl-CoA lyase.
   
 
 0.918
Mnod_4905
PFAM: pyruvate carboxyltransferase; KEGG: met:M446_5092 pyruvate carboxyltransferase.
   
 
 0.918
Mnod_6364
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: met:M446_5856 3-oxoacid CoA-transferase, A subunit.
 
 
 0.915
Mnod_2278
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: met:M446_1572 3-oxoacid CoA-transferase, B subunit.
  
 0.910
Mnod_7618
PFAM: Acetoacetate decarboxylase; KEGG: bxe:Bxe_A2916 acetoacetate decarboxylase.
    
  0.907
Mnod_2277
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: met:M446_1573 3-oxoacid CoA-transferase, A subunit.
  
 
 0.903
Mnod_4593
PFAM: Patatin; KEGG: met:M446_4797 patatin.
 
 
   0.683
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 
 0.510
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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