Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4624KEGG: met:M446_2605 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Mnod_7077
PFAM: protein of unknown function DUF177; KEGG: met:M446_6228 hypothetical protein.
  
    0.776
Mnod_4623
PFAM: NnrUfamily protein; KEGG: met:M446_2606 NnrU family protein.
       0.713
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.705
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.656
Mnod_5923
PFAM: protein of unknown function DUF1239; KEGG: met:M446_5274 hypothetical protein.
  
     0.646
Mnod_7653
PFAM: protein of unknown function DUF721; KEGG: met:M446_6940 hypothetical protein.
  
     0.639
Mnod_6514
PFAM: Septum formation initiator; KEGG: met:M446_5895 septum formation initiator.
  
   
 0.615
Mnod_0693
KEGG: met:M446_1097 hypothetical protein.
  
     0.613
Mnod_7421
PFAM: Domain of unknown function DUF1849; KEGG: met:M446_6683 hypothetical protein.
  
     0.609
Mnod_6741
PFAM: heat shock protein DnaJ domain protein; KEGG: met:M446_6495 heat shock protein DnaJ domain-containing protein.
  
   
 0.598
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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