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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4635KEGG: met:M446_2592 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Mnod_5864
KEGG: met:M446_5368 hypothetical protein.
  
     0.750
Mnod_6363
PFAM: AsmA family protein; KEGG: met:M446_5855 AsmA family protein.
  
     0.737
Mnod_0452
KEGG: met:M446_2015 hypothetical protein.
  
     0.708
Mnod_0718
KEGG: met:M446_1117 hypothetical protein.
  
     0.706
Mnod_4552
Porin; KEGG: met:M446_3063 porin.
  
     0.686
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.674
Mnod_1064
PFAM: conserved hypothetical protein; KEGG: met:M446_2096 hypothetical protein.
  
     0.669
Mnod_2705
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mrd:Mrad2831_0112 hypothetical protein.
  
     0.666
Mnod_1840
KEGG: met:M446_4884 hypothetical protein.
  
     0.659
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.652
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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