STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4671TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: met:M446_4774 TRAP dicarboxylate transporter, DctP subunit. (339 aa)    
Predicted Functional Partners:
Mnod_0979
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_2121 TRAP-type C4-dicarboxylate transporter small and large permease.
 
  
 0.894
Mnod_3078
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_4095 TRAP-type C4-dicarboxylate transporter small and large permease.
 
  
 0.894
Mnod_4386
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: met:M446_2741 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.894
Mnod_6903
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: met:M446_0560 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.894
Mnod_5946
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: met:M446_5226 TRAP dicarboxylate transporter, DctM subunit.
  
 0.843
Mnod_7253
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: met:M446_6032 TRAP dicarboxylate transporter, DctM subunit.
 
  
 0.818
Mnod_5945
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: met:M446_5227 tripartite ATP-independent periplasmic transporter DctQ.
 
  
 0.798
Mnod_7254
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: met:M446_6031 tripartite ATP-independent periplasmic transporter DctQ.
 
  
 0.580
Mnod_4670
KEGG: met:M446_4776 hypothetical protein.
       0.427
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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