Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4684TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: met:M446_3265 galactarate dehydratase. (516 aa)    
Predicted Functional Partners:
Mnod_7096
TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: met:M446_6204 glucarate dehydratase.
 
 
 0.975
Mnod_4686
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: met:M446_3263 mandelate racemase/muconate lactonizing protein.
 
 
 0.958
Mnod_7095
PFAM: HpcH/HpaI aldolase; KEGG: met:M446_6205 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.830
Mnod_3705
PFAM: SAF domain protein; KEGG: mrd:Mrad2831_5980 hypothetical protein.
 
     0.771
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.674
Mnod_0976
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: azc:AZC_3347 mannitol dehydrogenase.
 
  
 0.617
Mnod_4805
PFAM: KDPG and KHG aldolase; KEGG: met:M446_4621 KDPG and KHG aldolase.
 
  
 0.585
Mnod_4685
PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_3264 major facilitator transporter.
  
  
 0.545
Mnod_4546
PFAM: PfkB domain protein; KEGG: met:M446_3070 ribokinase-like domain-containing protein.
 
   
 0.494
Mnod_1466
PFAM: type III effector Hrp-dependent outers; KEGG: mrd:Mrad2831_4643 hypothetical protein.
 
     0.461
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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