Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4686PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: met:M446_3263 mandelate racemase/muconate lactonizing protein. (378 aa)    
Predicted Functional Partners:
Mnod_7096
TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: met:M446_6204 glucarate dehydratase.
 
  
  0.971
Mnod_4684
TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: met:M446_3265 galactarate dehydratase.
 
 
 0.958
Mnod_4685
PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_3264 major facilitator transporter.
     
 0.566
Mnod_4805
PFAM: KDPG and KHG aldolase; KEGG: met:M446_4621 KDPG and KHG aldolase.
 
   
 0.466
Mnod_0419
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: met:M446_2084 SMP-30/gluconolaconase/LRE domain-containing protein.
 
  
 0.431
Mnod_3414
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: oan:Oant_4583 xylose isomerase domain protein TIM barrel.
  
     0.429
Mnod_7095
PFAM: HpcH/HpaI aldolase; KEGG: met:M446_6205 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.412
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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