Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4696KEGG: ava:Ava_5063 hypothetical protein. (88 aa)    
Predicted Functional Partners:
Mnod_4695
KEGG: ava:Ava_5063 hypothetical protein.
 
    
0.622
Mnod_0441
PFAM: LmbE family protein; KEGG: met:M446_2069 LmbE family protein.
  
     0.577
Mnod_4694
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rrs:RoseRS_0920 ATPase, P-type (transporting), HAD superfamily, subfamily IC.
 
     0.534
Mnod_4496
KEGG: met:M446_4563 hypothetical protein.
  
     0.434
Mnod_4697
KEGG: nmu:Nmul_A0032 hypothetical protein.
       0.413
Mnod_1462
PFAM: acyltransferase 3; KEGG: rme:Rmet_2746 acyltransferase 3.
  
     0.410
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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