Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4704KEGG: met:M446_4188 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Mnod_4705
KEGG: met:M446_4189 hypothetical protein.
 
     0.929
Mnod_4707
KEGG: met:M446_4191 hypothetical protein.
 
     0.871
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
       0.808
Mnod_0717
KEGG: met:M446_1118 hypothetical protein.
  
     0.774
Mnod_4716
KEGG: met:M446_4201 hypothetical protein.
  
     0.774
Mnod_2808
KEGG: met:M446_2404 hypothetical protein.
  
     0.773
Mnod_2312
KEGG: met:M446_4186 hypothetical protein.
  
     0.771
Mnod_5541
KEGG: met:M446_5158 TPR repeat-containing protein.
  
     0.770
Mnod_6059
KEGG: met:M446_5124 putative flagellar assembly protein FliH.
  
     0.767
Mnod_1349
PFAM: flagellar FlaF family protein; KEGG: met:M446_0894 flagellar FlaF family protein.
 
     0.762
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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