Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4707KEGG: met:M446_4191 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Mnod_4705
KEGG: met:M446_4189 hypothetical protein.
 
     0.899
Mnod_4704
KEGG: met:M446_4188 hypothetical protein.
 
     0.871
Mnod_4717
KEGG: met:M446_4202 hypothetical protein.
  
   
 0.790
Mnod_5541
KEGG: met:M446_5158 TPR repeat-containing protein.
  
     0.774
Mnod_6059
KEGG: met:M446_5124 putative flagellar assembly protein FliH.
  
     0.769
Mnod_6064
PFAM: flagellar hook-length control protein; KEGG: met:M446_5119 flagellar hook-length control protein.
  
     0.767
Mnod_0387
KEGG: met:M446_2224 putative chemotaxis phosphatase, CheZ.
  
     0.765
Mnod_4711
TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: met:M446_4196 flagella basal body P-ring formation protein FlgA.
  
     0.760
Mnod_4714
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.758
Mnod_4715
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: met:M446_4200 flagellar motor switch protein FliM.
  
     0.758
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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