Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mnod_4734 | Mnod_4736 | Mnod_4734 | Mnod_4736 | PFAM: protein of unknown function DUF610 YibQ; KEGG: met:M446_4224 protein of unknown function DUF610 YibQ. | KEGG: met:M446_4226 hypothetical protein. | 0.522 |
Mnod_4734 | rppH | Mnod_4734 | Mnod_4735 | PFAM: protein of unknown function DUF610 YibQ; KEGG: met:M446_4224 protein of unknown function DUF610 YibQ. | NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.607 |
Mnod_4736 | Mnod_4734 | Mnod_4736 | Mnod_4734 | KEGG: met:M446_4226 hypothetical protein. | PFAM: protein of unknown function DUF610 YibQ; KEGG: met:M446_4224 protein of unknown function DUF610 YibQ. | 0.522 |
Mnod_4736 | rppH | Mnod_4736 | Mnod_4735 | KEGG: met:M446_4226 hypothetical protein. | NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.671 |
rppH | Mnod_4734 | Mnod_4735 | Mnod_4734 | NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | PFAM: protein of unknown function DUF610 YibQ; KEGG: met:M446_4224 protein of unknown function DUF610 YibQ. | 0.607 |
rppH | Mnod_4736 | Mnod_4735 | Mnod_4736 | NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | KEGG: met:M446_4226 hypothetical protein. | 0.671 |