Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mnod_4754PFAM: peptidase S45 penicillin amidase; KEGG: met:M446_4245 peptidase S45 penicillin amidase. (792 aa)    
Predicted Functional Partners:
Mnod_1011
PFAM: beta-lactamase; KEGG: met:M446_1390 beta-lactamase.
     
  0.900
Mnod_1369
Microcystin LR degradation protein MlrC-like protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.517
Mnod_1368
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: met:M446_0873 peptidase M20.
     
 0.485
Mnod_2360
PFAM: cytochrome c oxidase subunit III; KEGG: met:M446_3896 cytochrome c oxidase.
  
     0.482
Mnod_2852
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: met:M446_2713 thiamine pyrophosphate binding domain-containing protein.
       0.470
Mnod_5177
PFAM: aminoglycoside 3-N-acetyltransferase; KEGG: rec:RHECIAT_CH0001181 aminoglycoside N3'-acetyltransferase protein.
  
     0.433
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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