Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_4770PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: met:M446_4260 transglutaminase family protein cysteine peptidase BTLCP. (213 aa)    
Predicted Functional Partners:
Mnod_0270
KEGG: met:M446_2339 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
 
 
 
 0.794
Mnod_7506
KEGG: met:M446_6759 hypothetical protein.
  
     0.767
Mnod_3620
TIGRFAM: flagellar export protein FliJ; KEGG: met:M446_3948 flagellar export protein FliJ.
  
     0.761
Mnod_7208
KEGG: met:M446_6292 hypothetical protein.
  
     0.758
Mnod_1064
PFAM: conserved hypothetical protein; KEGG: met:M446_2096 hypothetical protein.
  
     0.756
Mnod_0172
KEGG: met:M446_4587 hypothetical protein.
  
     0.743
Mnod_1839
PFAM: Invasion associated locus B family protein; KEGG: met:M446_4885 invasion associated locus B family protein.
  
     0.741
Mnod_4517
KEGG: met:M446_3666 hypothetical protein.
  
     0.740
Mnod_5963
PFAM: protein of unknown function DUF1036; KEGG: met:M446_5206 hypothetical protein.
  
     0.740
Mnod_7180
PFAM: Invasion associated locus B family protein; KEGG: met:M446_6313 invasion associated locus B family protein.
  
     0.735
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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