Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_4771KEGG: mrd:Mrad2831_5901 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Mnod_3452
PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: mrd:Mrad2831_4899 CDP-diacylglycerol diphosphatase.
  
     0.618
Mnod_7480
PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: mrd:Mrad2831_4384 CDP-diacylglycerol diphosphatase.
  
     0.611
Mnod_4080
PFAM: peptidase U35 phage prohead HK97; KEGG: ppf:Pput_4115 peptidase U35, phage prohead HK97.
  
     0.570
Mnod_5067
PFAM: peptidase U35 phage prohead HK97; KEGG: ppf:Pput_4115 peptidase U35, phage prohead HK97.
  
     0.562
Mnod_2613
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_0240 putative major head protein/prohead protease.
  
     0.561
Mnod_4282
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_0240 putative major head protein/prohead protease.
  
     0.561
Mnod_3626
PFAM: regulatory protein MarR; iron dependent repressor; KEGG: met:M446_3941 DtxR family iron dependent repressor.
  
     0.454
Mnod_4770
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: met:M446_4260 transglutaminase family protein cysteine peptidase BTLCP.
       0.423
Mnod_1571
PFAM: PsiF repeat protein; KEGG: pau:PA14_64460 hypothetical protein.
  
     0.422
Mnod_4772
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: gdi:GDI1409 putative transposase.
       0.408
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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