Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4773TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: met:M446_1953 poly(R)-hydroxyalkanoic acid synthase, class I. (651 aa)    
Predicted Functional Partners:
Mnod_4780
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_5281 acetoacetyl-CoA reductase.
 
 
 0.964
Mnod_0752
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: met:M446_4709 polyhydroxyalkanoate depolymerase, intracellular.
 
  
 0.961
Mnod_1489
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: met:M446_0683 polyhydroxyalkanoate depolymerase, intracellular.
 
  
 0.959
Mnod_1836
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: met:M446_4888 polyhydroxyalkanoate depolymerase, intracellular.
 
  
 0.959
Mnod_5970
PFAM: MaoC domain protein dehydratase; KEGG: met:M446_5194 dehydratase.
 
  
 0.935
Mnod_5242
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: met:M446_3281 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
   
 
 0.912
Mnod_5918
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: met:M446_5279 polyhydroxyalkonate synthesis repressor, PhaR.
 
   
 0.780
Mnod_5355
PFAM: Patatin; KEGG: met:M446_5048 patatin.
 
   
 0.626
Mnod_4774
PFAM: Surfeit locus 1 family protein; KEGG: mrd:Mrad2831_1735 surfeit locus 1 family protein.
       0.566
Mnod_5916
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_5281 acetoacetyl-CoA reductase.
  
  
 0.529
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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