Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4779PFAM: General substrate transporter; KEGG: mpo:Mpop_4855 general substrate transporter. (444 aa)    
Predicted Functional Partners:
Mnod_4778
TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: mex:Mext_4337 ubiquinol oxidase, subunit II.
 
   
 0.885
Mnod_4775
TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: mpo:Mpop_4851 cytochrome o ubiquinol oxidase subunit IV.
 
   
 0.862
Mnod_4774
PFAM: Surfeit locus 1 family protein; KEGG: mrd:Mrad2831_1735 surfeit locus 1 family protein.
 
     0.828
Mnod_4776
TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: met:M446_5733 cytochrome o ubiquinol oxidase, subunit III.
 
     0.789
Mnod_4777
TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: mpo:Mpop_4853 cytochrome o ubiquinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.759
Mnod_4780
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_5281 acetoacetyl-CoA reductase.
       0.590
Mnod_2702
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mab:MAB_0771c major facilitator transporter.
  
     0.532
Mnod_2777
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: met:M446_5703 major facilitator transporter.
  
    0.443
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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