Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4799PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase. (385 aa)    
Predicted Functional Partners:
Mnod_4798
Hypothetical protein.
       0.773
Mnod_4337
PFAM: transposase IS3/IS911 family protein; KEGG: mex:Mext_3530 transposase IS3/IS911 family protein.
  
     0.720
Mnod_6820
KEGG: mpo:Mpop_3816 transposase IS3/IS911 family protein.
  
     0.672
Mnod_6452
PFAM: transposase IS3/IS911 family protein; KEGG: nwi:Nwi_2864 transposase IS3/IS911.
 
  
 0.649
Mnod_5037
PFAM: Integrase catalytic region; KEGG: bxe:Bxe_C0793 putative integrase.
 
     0.578
Mnod_4022
PFAM: Integrase catalytic region; KEGG: bxe:Bxe_C0793 putative integrase.
 
     0.473
Mnod_4800
Magnesium transporter; Acts as a magnesium transporter.
       0.473
Mnod_7487
KEGG: gdi:GDI2819 putative transposase.
  
     0.412
Mnod_6834
PFAM: Integrase catalytic region; KEGG: met:M446_6408 integrase catalytic region.
 
    0.401
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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