Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_4881PFAM: Collagen triple helix repeat; KEGG: met:M446_3487 triple helix repeat-containing collagen. (743 aa)    
Predicted Functional Partners:
Mnod_0494
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: met:M446_1684 endonuclease/exonuclease/phosphatase.
  
     0.674
Mnod_3778
KEGG: mpo:Mpop_2350 hypothetical protein.
  
     0.596
Mnod_5460
KEGG: met:M446_0253 capsular polysaccharide biosynthesis protein-like protein.
  
     0.564
Mnod_7134
KEGG: met:M446_6358 hypothetical protein.
  
     0.530
Mnod_4882
Hypothetical protein; KEGG: acr:Acry_0615 glycosyl transferase, group 1.
  
     0.503
Mnod_1941
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: met:M446_0321 capsule polysaccharide biosynthesis protein.
  
     0.483
Mnod_6689
KEGG: met:M446_0253 capsular polysaccharide biosynthesis protein-like protein.
  
     0.474
Mnod_4155
PFAM: restriction endonuclease; KEGG: met:M446_4420 restriction endonuclease.
  
     0.445
Mnod_2750
KEGG: nar:Saro_3231 hypothetical protein.
  
     0.402
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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