STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4883PFAM: Di-haem cytochrome c peroxidase; KEGG: xau:Xaut_3462 di-haem cytochrome c peroxidase. (367 aa)    
Predicted Functional Partners:
Mnod_1225
PFAM: electron transport protein SCO1/SenC; KEGG: met:M446_1125 electron transport protein SCO1/SenC.
  
 0.925
Mnod_4884
PFAM: extracellular solute-binding protein family 3; KEGG: xau:Xaut_3461 extracellular solute-binding protein.
       0.773
Mnod_1226
KEGG: met:M446_1126 selenium-binding protein, putative.
 
 
 0.637
Mnod_4885
KEGG: xau:Xaut_3460 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
 
   
 0.616
Mnod_6893
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_5824 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.600
Mnod_0790
KEGG: met:M446_2934 hypothetical protein.
  
 
 0.520
Mnod_5316
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: met:M446_5012 YVTN beta-propeller repeat-containing protein.
  
 
 0.520
Mnod_5324
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: met:M446_5020 YVTN beta-propeller repeat-containing protein.
  
 
 0.520
Mnod_3207
KEGG: tbd:Tbd_0914 hypothetical protein.
  
 
 0.519
Mnod_2110
KEGG: azc:AZC_4652 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.471
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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