STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4891KEGG: mex:Mext_1177 cyclic nucleotide-binding. (95 aa)    
Predicted Functional Partners:
Mnod_0158
KEGG: met:M446_4601 ferredoxin protein.
 
     0.767
Mnod_6636
PFAM: DoxX family protein; KEGG: mex:Mext_1676 DoxX family protein.
  
   0.719
Mnod_6353
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: met:M446_5171 GAF sensor hybrid histidine kinase.
 
 
 
 0.703
Mnod_4676
PFAM: protein of unknown function DUF181; KEGG: met:M446_3967 hypothetical protein.
  
     0.640
Mnod_6114
SMART: TIR protein; KEGG: paa:Paes_1105 TPR repeat-containing protein.
  
     0.630
Mnod_5293
PFAM: WD-40 repeat protein; cytochrome c class I; KEGG: met:M446_3100 cytochrome c class I.
 
 0.580
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
 
 0.559
Mnod_0089
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_0534 adenylate/guanylate cyclase.
  
 0.550
Mnod_0096
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: met:M446_0534 adenylate/guanylate cyclase.
  
 0.550
Mnod_3450
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_2813 TPR repeat-containing adenylate/guanylate cyclase.
  
 0.550
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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