STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4927KEGG: met:M446_4356 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Mnod_0705
KEGG: met:M446_2059 hypothetical protein.
  
     0.620
Mnod_5158
KEGG: met:M446_4495 hypothetical protein.
  
     0.598
Mnod_6551
PFAM: plasmid encoded RepA protein; KEGG: met:M446_5948 plasmid encoded RepA protein.
  
     0.566
Mnod_0307
KEGG: met:M446_2298 hypothetical protein.
  
     0.559
Mnod_6717
KEGG: bur:Bcep18194_B2680 LuxR family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.505
Mnod_4926
KEGG: met:M446_4358 hypothetical protein.
       0.497
Mnod_0853
KEGG: met:M446_5532 hypothetical protein.
  
     0.491
Mnod_2179
PFAM: Sporulation domain protein; KEGG: met:M446_2481 sporulation domain-containing protein.
  
     0.488
Mnod_0951
PFAM: CsbD family protein; KEGG: acr:Acry_3194 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
     0.464
Mnod_1493
PFAM: protein of unknown function DUF892; KEGG: met:M446_0688 hypothetical protein.
  
     0.451
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.