Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Mnod_4964PFAM: protein of unknown function DUF330; KEGG: met:M446_4936 hypothetical protein. (200 aa)    
Predicted Functional Partners:
Mnod_4963
PFAM: Mammalian cell entry related domain protein; KEGG: met:M446_4935 hypothetical protein.
 
   0.985
Mnod_4962
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_4934 ABC transporter related.
 
    0.913
Mnod_4961
PFAM: protein of unknown function DUF140; KEGG: met:M446_4933 hypothetical protein.
 
  
 0.866
Mnod_1479
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.635
Mnod_6604
KEGG: met:M446_6067 hypothetical protein.
  
     0.629
Mnod_1311
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.628
Mnod_6698
Porin; PFAM: porin; KEGG: mpo:Mpop_0836 porin.
  
     0.619
Mnod_4517
KEGG: met:M446_3666 hypothetical protein.
  
     0.577
Mnod_2044
Porin; PFAM: porin; KEGG: met:M446_4335 porin.
  
     0.571
Mnod_1624
Porin; KEGG: met:M446_4335 porin.
  
     0.570
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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