Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5033KEGG: met:M446_7034 hypothetical protein. (250 aa)    
Predicted Functional Partners:
Mnod_6189
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pde:Pden_3281 transposase, IS204/IS1001/IS1096/IS1165 family protein.
  
     0.620
Mnod_2991
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mlo:mll5961 transposase.
  
     0.615
Mnod_3101
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mlo:mll5961 transposase.
  
     0.615
Mnod_4601
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mlo:mll5961 transposase.
  
     0.615
Mnod_6810
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: met:M446_0816 resolvase domain-containing protein.
 
     0.461
Mnod_5397
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: met:M446_0816 resolvase domain-containing protein.
 
     0.456
Mnod_7350
KEGG: nwi:Nwi_3117 hypothetical protein.
  
     0.455
Mnod_3735
TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: rle:pRL100002 putative RepB replication protein; Belongs to the ParB family.
  
     0.447
Mnod_5872
TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: met:M446_5376 plasmid partitioning protein RepB; Belongs to the ParB family.
  
     0.444
Mnod_5032
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rsq:Rsph17025_0802 transposase IS116/IS110/IS902 family protein.
     
 0.408
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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