Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5068PFAM: Terminase; KEGG: oan:Oant_0238 phage terminase. (566 aa)    
Predicted Functional Partners:
Mnod_5067
PFAM: peptidase U35 phage prohead HK97; KEGG: ppf:Pput_4115 peptidase U35, phage prohead HK97.
 
     0.929
Mnod_5065
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.902
Mnod_4078
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.787
Mnod_2611
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.786
Mnod_4284
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.786
Mnod_7331
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: dvu:DVU1502 HK97 family portal protein.
 
   
 0.771
Mnod_1996
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: det:DET1087 HK97 family portal protein, putative.
 
   
 0.769
Mnod_4080
PFAM: peptidase U35 phage prohead HK97; KEGG: ppf:Pput_4115 peptidase U35, phage prohead HK97.
 
     0.753
Mnod_5069
KEGG: mex:Mext_3538 hypothetical protein.
     
 0.749
Mnod_2613
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_0240 putative major head protein/prohead protease.
 
     0.745
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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