Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5082Hypothetical protein. (90 aa)    
Predicted Functional Partners:
Mnod_5083
KEGG: nfa:nfa4040 hypothetical protein.
       0.499
Mnod_5074
Hypothetical protein.
       0.485
Mnod_5075
KEGG: gdi:GDI3661 hypothetical protein.
       0.485
Mnod_5076
Hypothetical protein.
       0.485
Mnod_5077
Putative deoxyribonuclease; KEGG: bid:Bind_3505 conserved hypothetical protein; putative deoxyribonuclease.
       0.485
Mnod_5078
KEGG: met:M446_4093 hypothetical protein.
       0.485
Mnod_5079
PFAM: MT-A70 family protein; KEGG: met:M446_4092 MT-A70 family protein; Belongs to the MT-A70-like family.
       0.485
Mnod_5080
Hypothetical protein.
       0.485
Mnod_5081
PFAM: VRR-NUC domain protein; KEGG: rfr:Rfer_4465 hypothetical protein.
       0.485
Mnod_5084
KEGG: met:M446_4084 hypothetical protein.
       0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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