Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Mnod_5129KEGG: xau:Xaut_5008 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Mnod_5128
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.815
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.481
Mnod_3081
KEGG: pde:Pden_4821 hypothetical protein.
  
     0.476
Mnod_6077
KEGG: met:M446_5365 hypothetical protein.
  
     0.455
Mnod_3267
PFAM: extracellular solute-binding protein family 5; KEGG: met:M446_2701 extracellular solute-binding protein.
  
     0.447
Mnod_5127
PFAM: type IV pilus assembly PilZ; KEGG: met:M446_3234 type IV pilus assembly PilZ.
       0.439
Mnod_3077
PFAM: Thiolase; KEGG: mrd:Mrad2831_0689 propanoyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
     0.409
Mnod_3536
KEGG: pph:Ppha_1903 hypothetical protein.
  
     0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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