Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_5146PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4508 binding-protein-dependent transport systems inner membrane component. (277 aa)    
Predicted Functional Partners:
Mnod_5145
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_4509 ABC transporter related.
 
 
 0.973
Mnod_5147
SMART: extracellular solute-binding protein family 3; KEGG: met:M446_4507 ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein.
 
 
 0.911
Mnod_4887
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_3458 ABC transporter related.
 
 
 0.874
Mnod_3418
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3092 ABC transporter related.
 
 
 0.870
Mnod_0327
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_2275 ABC transporter related.
 
 
 0.868
Mnod_2984
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_0771 ABC transporter related.
 
 
 0.867
Mnod_0056
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_0056 ABC transporter related.
 
 
 0.862
Mnod_2678
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_3451 ABC transporter related.
 
 
 0.853
Mnod_4894
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_3456 ABC transporter related.
 
 
 0.843
ssuB
ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.841
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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