STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5166PFAM: extracellular solute-binding protein family 3; KEGG: met:M446_4485 extracellular solute-binding protein. (294 aa)    
Predicted Functional Partners:
Mnod_5165
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4486 polar amino acid ABC transporter, inner membrane subunit.
 0.995
Mnod_5164
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4487 polar amino acid ABC transporter, inner membrane subunit.
 
 0.993
Mnod_5163
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_4488 ABC transporter related.
 
 
 0.990
Mnod_0893
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet4444 amino acids ABC transporter, permease protein.
 
 
 0.833
Mnod_0892
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet4445 amino acids ABC transporter, permease protein.
 
 
 0.827
Mnod_2391
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_3588 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.826
Mnod_3671
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_1744 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.826
Mnod_3974
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0817 ABC transporter permease protein.
 
 
 0.826
Mnod_3672
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_1743 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.825
Mnod_4479
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4545 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.820
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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