Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_5169TIGRFAM: conserved hypothetical membrane protein; KEGG: met:M446_4482 hypothetical protein. (939 aa)    
Predicted Functional Partners:
Mnod_5170
PFAM: protein of unknown function DUF58; KEGG: met:M446_4481 hypothetical protein.
 
    0.963
Mnod_5171
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: met:M446_4480 ATPase.
 
     0.926
Mnod_5168
PFAM: protein of unknown function DUF1355; KEGG: met:M446_4483 hypothetical protein.
 
     0.924
Mnod_1680
KEGG: met:M446_4849 hypothetical protein.
  
     0.774
Mnod_5173
PFAM: protein of unknown function DUF1285; KEGG: met:M446_4478 hypothetical protein.
 
     0.688
Mnod_5909
PFAM: helix-turn-helix domain protein; KEGG: met:M446_5287 XRE family transcriptional regulator.
  
     0.678
Mnod_0230
PFAM: helix-turn-helix domain protein; KEGG: met:M446_3177 XRE family transcriptional regulator.
  
     0.675
Mnod_5960
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_5209 TPR repeat-containing protein.
  
     0.663
Mnod_5176
PFAM: Polynucleotide adenylyltransferase region; KEGG: met:M446_4475 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.644
Mnod_0714
PFAM: protein of unknown function DUF1491; KEGG: met:M446_1121 hypothetical protein.
  
     0.638
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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