Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Mnod_5171PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: met:M446_4480 ATPase. (336 aa)    
Predicted Functional Partners:
Mnod_5170
PFAM: protein of unknown function DUF58; KEGG: met:M446_4481 hypothetical protein.
  
 0.981
Mnod_5169
TIGRFAM: conserved hypothetical membrane protein; KEGG: met:M446_4482 hypothetical protein.
 
     0.926
Mnod_5168
PFAM: protein of unknown function DUF1355; KEGG: met:M446_4483 hypothetical protein.
 
     0.866
Mnod_0286
PFAM: Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: mrd:Mrad2831_4404 ornithine decarboxylase.
   
 
 0.720
Mnod_1005
PFAM: protein of unknown function DUF58; KEGG: met:M446_1384 hypothetical protein.
 
  
 0.714
Mnod_1007
PFAM: von Willebrand factor type A; KEGG: met:M446_1386 von Willebrand factor type A.
 
  
 0.658
Mnod_5172
PFAM: thioesterase superfamily protein; KEGG: met:M446_4479 thioesterase superfamily protein.
       0.490
Mnod_5176
PFAM: Polynucleotide adenylyltransferase region; KEGG: met:M446_4475 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.483
Mnod_5173
PFAM: protein of unknown function DUF1285; KEGG: met:M446_4478 hypothetical protein.
       0.480
Mnod_5174
PFAM: NUDIX hydrolase; KEGG: met:M446_4477 NUDIX hydrolase.
       0.480
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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