Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5175KEGG: met:M446_4476 hypothetical protein. (85 aa)    
Predicted Functional Partners:
Mnod_5173
PFAM: protein of unknown function DUF1285; KEGG: met:M446_4478 hypothetical protein.
       0.853
Mnod_5174
PFAM: NUDIX hydrolase; KEGG: met:M446_4477 NUDIX hydrolase.
       0.853
Mnod_5176
PFAM: Polynucleotide adenylyltransferase region; KEGG: met:M446_4475 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.853
Mnod_5172
PFAM: thioesterase superfamily protein; KEGG: met:M446_4479 thioesterase superfamily protein.
       0.741
Mnod_5170
PFAM: protein of unknown function DUF58; KEGG: met:M446_4481 hypothetical protein.
       0.571
Mnod_5169
TIGRFAM: conserved hypothetical membrane protein; KEGG: met:M446_4482 hypothetical protein.
       0.524
Mnod_5171
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: met:M446_4480 ATPase.
       0.472
Mnod_5168
PFAM: protein of unknown function DUF1355; KEGG: met:M446_4483 hypothetical protein.
       0.414
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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