STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5221PFAM: Heparinase II/III family protein; KEGG: met:M446_2964 heparinase II/III family protein. (573 aa)    
Predicted Functional Partners:
Mnod_5219
PFAM: protein of unknown function DUF1674; KEGG: met:M446_2962 hypothetical protein.
 
     0.696
Mnod_5220
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: met:M446_2963 Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.680
Mnod_5963
PFAM: protein of unknown function DUF1036; KEGG: met:M446_5206 hypothetical protein.
  
     0.635
purH
TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; KEGG: met:M446_2965 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase.
       0.631
Mnod_6741
PFAM: heat shock protein DnaJ domain protein; KEGG: met:M446_6495 heat shock protein DnaJ domain-containing protein.
  
   
 0.627
Mnod_2892
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.622
Mnod_4739
PFAM: protein of unknown function DUF1150; KEGG: met:M446_4229 hypothetical protein.
  
     0.615
Mnod_1606
PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; protein of unknown function DUF227; KEGG: met:M446_0493 aminoglycoside phosphotransferase.
  
   
 0.611
Mnod_7582
KEGG: met:M446_6846 hypothetical protein.
  
     0.608
Mnod_4732
PFAM: Peptidase M23; KEGG: met:M446_4222 peptidase M23B.
  
     0.599
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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