Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mnod_5229PFAM: UspA domain protein; KEGG: met:M446_3269 UspA domain-containing protein. (271 aa)    
Predicted Functional Partners:
Mnod_5231
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: met:M446_3271 cytochrome c oxidase, cbb3-type, subunit II.
 
    0.551
Mnod_5228
KEGG: met:M446_3268 hypothetical protein.
       0.550
Mnod_5233
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: met:M446_3273 cytochrome c oxidase, cbb3-type, subunit III.
 
    0.542
Mnod_5230
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: met:M446_3270 cytochrome c oxidase, cbb3-type, subunit I.
  
    0.521
Mnod_5232
PFAM: Cbb3-type cytochrome oxidase component; KEGG: met:M446_3272 Cbb3-type cytochrome oxidase component.
  
    0.473
Mnod_0501
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: met:M446_1042 AraC family transcriptional regulator.
  
  
 0.447
Mnod_6171
PFAM: aminoglycoside phosphotransferase; KEGG: met:M446_6097 hypothetical protein.
 
  
 0.403
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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