Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_5230TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: met:M446_3270 cytochrome c oxidase, cbb3-type, subunit I. (550 aa)    
Predicted Functional Partners:
Mnod_5231
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: met:M446_3271 cytochrome c oxidase, cbb3-type, subunit II.
 
 0.999
Mnod_2112
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: met:M446_3271 cytochrome c oxidase, cbb3-type, subunit II.
 
 0.998
Mnod_5233
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: met:M446_3273 cytochrome c oxidase, cbb3-type, subunit III.
 
 
 0.995
Mnod_2114
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.985
Mnod_2346
PFAM: cytochrome c class I; KEGG: met:M446_2992 cytochrome c class I.
 
 
 0.984
Mnod_7462
PFAM: FixH family protein; KEGG: met:M446_6712 FixH family protein.
 
 
 0.962
Mnod_7461
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: met:M446_6711 cytochrome c oxidase accessory protein CcoG.
 
  
 0.954
Mnod_5232
PFAM: Cbb3-type cytochrome oxidase component; KEGG: met:M446_3272 Cbb3-type cytochrome oxidase component.
 
  
 0.944
Mnod_5227
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: met:M446_3267 respiratory-chain NADH dehydrogenase domain-containing protein.
  
 
 0.938
Mnod_2347
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: met:M446_2991 cytochrome c oxidase, subunit II.
   
 
 0.906
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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